FastQC

A quality control application for high throughput sequence data. Homepage: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/

Example

Input file: galaxy_filter_by_quality_on_data_26M_solexa.fastq

Run:

$ /opt/FastQC/fastqc --noextract galaxy_filter_by_quality_on_data_26M_solexa.fastq 

Started analysis of galaxy_filter_by_quality_on_data_26M_solexa.fastq
Approx 5% complete for galaxy_filter_by_quality_on_data_26M_solexa.fastq
Approx 10% complete for galaxy_filter_by_quality_on_data_26M_solexa.fastq
....
Approx 95% complete for galaxy_filter_by_quality_on_data_26M_solexa.fastq
Approx 100% complete for galaxy_filter_by_quality_on_data_26M_solexa.fastq
Analysis complete for galaxy_filter_by_quality_on_data_26M_solexa.fastq
$ 

Output file: galaxy_filter_by_quality_on_data_26M_solexa_fastqc.zip